About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama28790EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama28791TGF-BETA FAMILY
Ama28793NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER
Ama28794CHROMOSOME 20 ORF85 FAMILY MEMBER
Ama28795PKSB
Ama2879660S RIBOSOMAL PROTEIN L7
Ama28797
Ama28798CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama28799
Ama28800HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED
Ama2880160S ACIDIC RIBOSOMAL PROTEIN P0
Ama28802INTERFERON ALPHA-INDUCIBLE PROTEIN 27
Ama28804ALPHA KINASE/ELONGATION FACTOR 2 KINASE
Ama28806ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
Ama28807AGAP008005-PA
Ama28808AGAP008005-PA
Ama28809PUTATIVE-RELATED
Ama28810
Ama28811
Ama28812PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama28813LATROPHILIN RECEPTOR-LIKE PROTEIN A
Ama28814INNER MEMBRANE PROTEIN, PROBABLE PERMEASE
Ama28815
Ama28816CARBOHYDRATE SULFOTRANSFERASE
Ama28817
Ama28818
Ama28819
Ama28820
Ama28821LP04239P
Ama28822EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama28823THAP DOMAIN PROTEIN
Ama28825MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
Ama28826TNF RECEPTOR ASSOCIATED FACTOR
Ama28827VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Ama28828LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Ama28829LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Ama28833LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Ama28834CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
Ama28837ZINC FINGER-CONTAINING PROTEIN P48ZNF
Ama28838REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama28839
Ama28840EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama28841
Ama28842EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama28844
Ama28845PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama28846TRANSCRIPTION INITIATION FACTOR TFIID
Ama28847-
Ama28848CELL DEATH ACTIVATOR CIDE
Ama28849RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
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