The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama28717 | |
| Ama28718 | IMMUNOGLOBULIN |
| Ama28720 | |
| Ama28721 | ADIPOGENESIS REGULATORY FACTOR |
| Ama28722 | TGF-BETA INDUCED APOPTOSIS PROTEIN |
| Ama28724 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Ama28725 | |
| Ama28726 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED |
| Ama28727 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama28729 | SYNTAXIN |
| Ama28731 | |
| Ama28732 | |
| Ama28733 | DULLARD PROTEIN PHOSPHATASE |
| Ama28734 | IOJAP SUPERFAMILY ORTHOLOG |
| Ama28735 | - |
| Ama28736 | - |
| Ama28737 | |
| Ama28738 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
| Ama28739 | DUF614 FAMILY PROTEIN-RELATED |
| Ama28740 | |
| Ama28742 | |
| Ama28743 | PUTATIVE-RELATED |
| Ama28744 | |
| Ama28745 | ZINC FINGER PROTEIN |
| Ama28748 | L-FUCOSE KINASE |
| Ama28750 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| Ama28754 | TRANSPOSON |
| Ama28757 | INNEXIN |
| Ama28758 | |
| Ama28759 | HISTONE-LYSINE N-METHYLTRANSFERASE SETD2 |
| Ama28763 | DNAJ HOMOLOG SUBFAMILY C MEMBER 2 |
| Ama28764 | PRESEQUENCE PROTEASE |
| Ama28765 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama28766 | SOLUTE CARRIER FAMILY 35 |
| Ama28768 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| Ama28769 | TRAFFICKING KINESIN-BINDING PROTEIN |
| Ama28770 | |
| Ama28771 | UNCHARACTERIZED |
| Ama28772 | |
| Ama28774 | WNT RELATED |
| Ama28775 | |
| Ama28779 | WNT RELATED |
| Ama28780 | WNT RELATED |
| Ama28781 | WNT RELATED |
| Ama28783 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| Ama28784 | |
| Ama28785 | VERTNIN |
| Ama28786 | |
| Ama28787 | |
| Ama28789 |
