The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama28646 | NXPE FAMILY MEMBER |
| Ama28647 | |
| Ama28649 | |
| Ama28651 | PEROXISOMAL BIOGENESIS FACTOR 11 |
| Ama28652 | |
| Ama28653 | PEROXISOMAL BIOGENESIS FACTOR 11 |
| Ama28654 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| Ama28655 | |
| Ama28656 | TRANSFERASE, PUTATIVE-RELATED |
| Ama28657 | PHOSPHOGLYCOLATE PHOSPHATASE |
| Ama28658 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| Ama28660 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Ama28661 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| Ama28662 | |
| Ama28664 | SOLUTE CARRIER FAMILY 35 |
| Ama28665 | |
| Ama28666 | SI:DKEY-276J7.1 |
| Ama28669 | SERINE/THREONINE-PROTEIN KINASE 17 |
| Ama28671 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Ama28673 | |
| Ama28674 | |
| Ama28677 | |
| Ama28678 | PIKACHURIN-LIKE PROTEIN |
| Ama28679 | |
| Ama28680 | |
| Ama28681 | PIKACHURIN-LIKE PROTEIN |
| Ama28682 | ISLET CELL AUTOANTIGEN 1 |
| Ama28683 | BONUS, ISOFORM C-RELATED |
| Ama28684 | ISLET CELL AUTOANTIGEN 1 |
| Ama28685 | ISLET CELL AUTOANTIGEN 1 |
| Ama28687 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Ama28689 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| Ama28691 | |
| Ama28692 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama28693 | UNCHARACTERIZED |
| Ama28694 | |
| Ama28699 | |
| Ama286_5db7b01a | |
| Ama28700 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Ama28702 | ANION EXCHANGE PROTEIN |
| Ama28703 | |
| Ama28704 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
| Ama28705 | P-SELECTIN GLYCOPROTEIN LIGAND-1 |
| Ama28707 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Ama28708 | ATP-DEPENDENT DNA HELICASE |
| Ama28709 | THAP DOMAIN PROTEIN |
| Ama28711 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama28712 | |
| Ama28713 | |
| Ama28716 | PARATHYROID HORMONE-RESPONSIVE B1 GENE |
