About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_47335-0.16AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Bpl_scaf_47335-0.5AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Bpl_scaf_47335-1.4UNCHARACTERIZED
Bpl_scaf_47335-1.6FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Bpl_scaf_47343-0.1POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Bpl_scaf_47343-1.14
Bpl_scaf_47343-1.8
Bpl_scaf_47347-0.0
Bpl_scaf_47347-1.7
Bpl_scaf_47347-1.9
Bpl_scaf_47358-0.11GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 1
Bpl_scaf_47358-1.15
Bpl_scaf_47358-1.16
Bpl_scaf_47358-1.18DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_47358-1.19AGAP005574-PA
Bpl_scaf_47358-1.20
Bpl_scaf_47359-0.1
Bpl_scaf_47363-0.7
Bpl_scaf_47363-0.8
Bpl_scaf_47363-1.10VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
Bpl_scaf_47363-1.11CT120 PROTEIN
Bpl_scaf_47366-0.0
Bpl_scaf_47372-0.1
Bpl_scaf_47374-0.6NUCLEOSIDE DIPHOSPHATE KINASE 7
Bpl_scaf_47374-1.10SI:CH211-189E2.2
Bpl_scaf_47374-1.14THAP DOMAIN PROTEIN
Bpl_scaf_47374-1.7COLLAGEN ALPHA
Bpl_scaf_47374-1.9SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED
Bpl_scaf_4738-0.0
Bpl_scaf_4738-0.1
Bpl_scaf_4738-0.7SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Bpl_scaf_4738-0.8WD40 REPEAT PROTEIN 12, 37
Bpl_scaf_4738-1.10N-ACYL-PHOSPHATIDYLETHANOLAMINE-HYDROLYZING PHOSPHOLIPASE D
Bpl_scaf_4738-1.37
Bpl_scaf_4738-1.38ZINC FINGER PROTEIN
Bpl_scaf_4738-1.39SUGAR KINASE
Bpl_scaf_47392-0.1
Bpl_scaf_47392-1.0
Bpl_scaf_47396-0.0
Bpl_scaf_47400-1.0
Bpl_scaf_47400-1.16
Bpl_scaf_47400-1.44
Bpl_scaf_47400-1.48
Bpl_scaf_47400-1.50NEPHRIN
Bpl_scaf_47400-1.51
Bpl_scaf_47400-1.52
Bpl_scaf_47400-1.53
Bpl_scaf_47400-1.54CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Bpl_scaf_47400-1.55
Bpl_scaf_47400-1.56CONTACTIN 5
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