Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_46648-0.0 | |
| Bpl_scaf_46651-0.1 | |
| Bpl_scaf_46651-0.13 | DUF3504 DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_46651-0.4 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_46651-0.5 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_46651-0.6 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_46651-0.7 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_46651-1.0 | |
| Bpl_scaf_46651-1.3 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_46651-1.4 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_46651-1.8 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| Bpl_scaf_46651-2.11 | CHONDROITIN SYNTHASE |
| Bpl_scaf_46651-2.12 | CHONDROITIN SYNTHASE |
| Bpl_scaf_46651-2.13 | - |
| Bpl_scaf_46651-2.17 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
| Bpl_scaf_46651-2.19 | STABILIZER OF AXONEMAL MICROTUBULES 2 |
| Bpl_scaf_46651-2.4 | 30S RIBOSOMAL PROTEIN S16 |
| Bpl_scaf_46651-2.40 | |
| Bpl_scaf_46651-2.41 | COPPER AMINE OXIDASE |
| Bpl_scaf_46651-2.42 | TRANSLATION ELONGATION FACTOR-RELATED |
| Bpl_scaf_46651-2.6 | STABILIZER OF AXONEMAL MICROTUBULES 2 |
| Bpl_scaf_468-0.10 | |
| Bpl_scaf_468-0.16 | |
| Bpl_scaf_468-0.3 | |
| Bpl_scaf_468-0.7 | |
| Bpl_scaf_4682-0.19 | AROMATIC AMINO ACID HYDROXYLASE |
| Bpl_scaf_4682-0.2 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_4682-0.7 | COPINE |
| Bpl_scaf_46836-0.0 | |
| Bpl_scaf_46836-0.10 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_46836-0.13 | HYALURONAN MEDIATED MOTILITY RECEPTOR |
| Bpl_scaf_46836-0.18 | |
| Bpl_scaf_46836-1.10 | SET AND MYND DOMAIN-CONTAINING PROTEIN 5 |
| Bpl_scaf_46836-1.11 | - |
| Bpl_scaf_46836-1.27 | GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7 |
| Bpl_scaf_46836-1.6 | THIOREDOXIN-RELATED |
| Bpl_scaf_46836-1.8 | MITOFERRIN-1-RELATED |
| Bpl_scaf_46837-0.12 | |
| Bpl_scaf_46837-0.14 | |
| Bpl_scaf_46837-0.15 | |
| Bpl_scaf_46837-1.21 | |
| Bpl_scaf_46837-1.26 | CYTOKINE RECEPTOR |
| Bpl_scaf_46837-1.28 | CYTOKINE RECEPTOR |
| Bpl_scaf_46837-2.1 | |
| Bpl_scaf_46837-2.10 | |
| Bpl_scaf_46837-2.12 | |
| Bpl_scaf_46837-2.23 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_46837-2.25 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED |
| Bpl_scaf_46837-2.28 | |
| Bpl_scaf_46837-2.29 |
