About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_46857-3.11LITHOSTATHINE
Bpl_scaf_46857-3.7
Bpl_scaf_46858-0.1
Bpl_scaf_46859-0.7E3 UBIQUITIN-PROTEIN LIGASE MIB2
Bpl_scaf_46859-0.9E3 UBIQUITIN-PROTEIN LIGASE MIB2
Bpl_scaf_46861-0.0
Bpl_scaf_46861-0.1
Bpl_scaf_46862-0.3
Bpl_scaf_46863-0.0
Bpl_scaf_46863-0.1
Bpl_scaf_46863-0.2
Bpl_scaf_46866-0.3PROLINE AND SERINE-RICH PROTEIN 1
Bpl_scaf_46866-0.4OVOCHYMASE-RELATED
Bpl_scaf_46866-1.10CYTOCHROME B5
Bpl_scaf_46866-1.18SODIUM/HYDROGEN EXCHANGER
Bpl_scaf_46866-1.8UNCHARACTERIZED
Bpl_scaf_46866-2.0
Bpl_scaf_46866-2.25PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN
Bpl_scaf_46866-2.27AQUAPORIN TRANSPORTER
Bpl_scaf_46866-2.8
Bpl_scaf_46866-2.9AQUAPORIN TRANSPORTER
Bpl_scaf_46866-3.13RNA POLYMERASE II NUCLEAR LOCALIZATION PROTEIN SLC7A6OS-RELATED
Bpl_scaf_46866-3.14OXA1
Bpl_scaf_46866-3.15TETRATRICOPEPTIDE REPEAT PROTEIN 5
Bpl_scaf_46866-3.17HEAT SHOCK REGULATED 2
Bpl_scaf_46866-3.6
Bpl_scaf_46868-0.5CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_46871-0.1DYMECLIN
Bpl_scaf_46873-0.3
Bpl_scaf_46874-0.7IG-LIKE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_46874-0.8
Bpl_scaf_46875-0.2NA+/CA2+ K+ INDEPENDENT EXCHANGER
Bpl_scaf_46876-0.14
Bpl_scaf_46876-0.6MERLIN/MOESIN/EZRIN/RADIXIN
Bpl_scaf_46876-1.3
Bpl_scaf_46876-1.6REPLICATION FACTOR A 1, RFA1
Bpl_scaf_46876-2.19MEIOSIS-EXPRESSED GENE 1 PROTEIN
Bpl_scaf_46876-2.20RGD1561648
Bpl_scaf_46876-2.21RGD1561648
Bpl_scaf_46876-2.22RGD1561648
Bpl_scaf_46876-2.23
Bpl_scaf_46876-2.24
Bpl_scaf_46876-3.15CARNITINE O-ACYLTRANSFERASE
Bpl_scaf_46876-3.18MUSKELIN
Bpl_scaf_46876-3.19POTE ANKYRIN DOMAIN
Bpl_scaf_46876-3.28
Bpl_scaf_46876-3.30HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H
Bpl_scaf_46890-0.0
Bpl_scaf_46898-0.2
Bpl_scaf_46913-0.4DEOXYCYTIDYLATE DEAMINASE-RELATED
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