Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_47253-0.7 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_47260-0.12 | TRANSMEMBRANE CHANNEL-RELATED |
| Bpl_scaf_47268-0.29 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_47268-0.30 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_47268-0.31 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_47268-0.35 | |
| Bpl_scaf_47280-0.0 | |
| Bpl_scaf_47280-0.1 | |
| Bpl_scaf_47280-0.15 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Bpl_scaf_47280-0.2 | |
| Bpl_scaf_47280-0.3 | |
| Bpl_scaf_47280-0.4 | |
| Bpl_scaf_47298-0.0 | |
| Bpl_scaf_47298-0.1 | |
| Bpl_scaf_47298-0.5 | |
| Bpl_scaf_47298-1.7 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Bpl_scaf_47298-1.8 | BCL-2 RELATED |
| Bpl_scaf_47298-2.12 | SUPPRESSOR OF VARIEGATION 4-20-RELATED |
| Bpl_scaf_47298-2.13 | UPF0711 PROTEIN C18ORF21 |
| Bpl_scaf_47298-2.14 | COLLAGEN ALPHA |
| Bpl_scaf_47298-2.20 | YALI0E30327P |
| Bpl_scaf_47298-2.8 | CARBONYL REDUCTASE 1-RELATED |
| Bpl_scaf_47298-3.11 | SERINE/ARGININE RICH SPLICING FACTOR |
| Bpl_scaf_47298-3.12 | RIBONUCLEOPROTEIN RB97D |
| Bpl_scaf_47298-4.0 | |
| Bpl_scaf_47298-4.6 | |
| Bpl_scaf_47298-4.7 | RNA HELICASE |
| Bpl_scaf_47298-5.6 | HISTONE-LYSINE N-METHYLTRANSFERASE EGGLESS |
| Bpl_scaf_47298-6.10 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| Bpl_scaf_47298-6.11 | BNIP1-RELATED |
| Bpl_scaf_47298-6.9 | SET DOMAIN PROTEINS |
| Bpl_scaf_47298-7.7 | UNCHARACTERIZED |
| Bpl_scaf_47299-0.4 | |
| Bpl_scaf_47299-0.8 | |
| Bpl_scaf_47309-0.29 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Bpl_scaf_47309-0.30 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Bpl_scaf_47309-0.31 | CHITIN BINDING PERITROPHIN-A |
| Bpl_scaf_47309-0.32 | BETA-HEXOSAMINIDASE |
| Bpl_scaf_47319-0.1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_47319-0.4 | |
| Bpl_scaf_47319-0.5 | TRANSPOSON |
| Bpl_scaf_47319-0.9 | |
| Bpl_scaf_47325-0.3 | RIBOSOME BIOGENESIS PROTEIN BRIX |
| Bpl_scaf_47325-0.4 | EIF4G DOMAIN PROTEIN |
| Bpl_scaf_47325-1.15 | SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1 |
| Bpl_scaf_47325-1.16 | PROTEIN ARGININE N-METHYLTRANSFERASE |
| Bpl_scaf_47325-1.19 | SNF2/RAD54 HELICASE FAMILY |
| Bpl_scaf_47325-1.20 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| Bpl_scaf_47325-1.32 | PNAS-3 RELATED |
| Bpl_scaf_47325-1.35 |
