Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_47411-0.3 | |
| Bpl_scaf_47418-1.1 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_47418-2.0 | |
| Bpl_scaf_47428-0.1 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_47428-0.2 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_47428-0.3 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_47428-0.5 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_47428-1.11 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Bpl_scaf_47428-1.12 | YEAST SPT2-RELATED |
| Bpl_scaf_47428-1.2 | TOLL-LIKE RECEPTOR |
| Bpl_scaf_47428-1.3 | |
| Bpl_scaf_47428-1.7 | COILIN |
| Bpl_scaf_47428-2.11 | BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATOR |
| Bpl_scaf_47428-2.13 | 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT |
| Bpl_scaf_47428-2.22 | |
| Bpl_scaf_47428-2.23 | ORGANIC ANION TRANSPORTER |
| Bpl_scaf_47428-2.24 | |
| Bpl_scaf_47429-0.0 | |
| Bpl_scaf_47429-0.10 | 2-5 OLIGOADENYLATE SYNTHETASE |
| Bpl_scaf_47429-1.13 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Bpl_scaf_47429-1.14 | CALCIUM BINDING PROTEINS |
| Bpl_scaf_47429-2.11 | |
| Bpl_scaf_47429-2.12 | |
| Bpl_scaf_47429-2.18 | PROTEIN CBG20488 |
| Bpl_scaf_47429-2.8 | PROTEIN CBG20488 |
| Bpl_scaf_47429-2.9 | |
| Bpl_scaf_47429-3.4 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER |
| Bpl_scaf_47429-3.5 | DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 2 |
| Bpl_scaf_47429-4.6 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| Bpl_scaf_47429-4.7 | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED |
| Bpl_scaf_47429-4.8 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Bpl_scaf_47429-5.3 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| Bpl_scaf_47429-5.7 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_47429-6.10 | CCAAT DISPLACEMENT PROTEIN-RELATED |
| Bpl_scaf_47429-6.13 | NUCLEOPORIN NUP84-RELATED |
| Bpl_scaf_47429-6.8 | |
| Bpl_scaf_47429-7.10 | - |
| Bpl_scaf_47429-7.13 | NGG1 INTERACTING FACTOR 3 |
| Bpl_scaf_47429-7.5 | CEREBELLIN-RELATED |
| Bpl_scaf_47429-7.8 | |
| Bpl_scaf_47429-8.10 | |
| Bpl_scaf_47429-8.11 | PROTEIN BARK BEETLE |
| Bpl_scaf_47429-9.0 | |
| Bpl_scaf_47429-9.13 | |
| Bpl_scaf_47429-9.14 | |
| Bpl_scaf_47429-9.7 | |
| Bpl_scaf_47430-0.14 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_47430-0.17 | |
| Bpl_scaf_47430-0.18 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
| Bpl_scaf_47430-0.19 |
