Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_4752-1.8 | |
| Bpl_scaf_47520-0.1 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_47521-0.14 | RNA POLYMERASE II HOLOENZYME COMPONENT SRB7 |
| Bpl_scaf_47521-0.15 | 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER |
| Bpl_scaf_47521-0.7 | |
| Bpl_scaf_47521-1.5 | CLATHRIN HEAVY CHAIN RELATED |
| Bpl_scaf_47521-2.0 | |
| Bpl_scaf_47521-2.2 | RPE-SPONDIN |
| Bpl_scaf_47521-4.19 | CALCIUM-TRANSPORTING ATPASE |
| Bpl_scaf_47521-4.21 | CALCIUM-TRANSPORTING ATPASE |
| Bpl_scaf_47521-4.5 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15 |
| Bpl_scaf_47522-0.4 | TEKTIN |
| Bpl_scaf_47522-1.11 | NUCLEOPROTEIN TPR-RELATED |
| Bpl_scaf_47524-0.5 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
| Bpl_scaf_47525-0.2 | SESQUIPEDALIAN |
| Bpl_scaf_47525-0.5 | |
| Bpl_scaf_47525-1.4 | T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED |
| Bpl_scaf_47525-1.5 | OROFACIAL CLEFT 1 CANDIDATE GENE 1 PROTEIN |
| Bpl_scaf_47525-1.6 | |
| Bpl_scaf_47534-0.0 | TRANSPOSABLE ELEMENT-RELATED |
| Bpl_scaf_47536-1.11 | |
| Bpl_scaf_47536-1.2 | |
| Bpl_scaf_47536-1.9 | |
| Bpl_scaf_47536-2.10 | TRANSLATION FACTOR GUF1-RELATED |
| Bpl_scaf_47536-2.9 | ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED |
| Bpl_scaf_47536-3.15 | THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED |
| Bpl_scaf_47536-3.16 | PLATELET-DERIVED GROWTH FACTOR |
| Bpl_scaf_47536-3.18 | CYCLINS |
| Bpl_scaf_47536-3.19 | NEDD4-BINDING PROTEIN 2 |
| Bpl_scaf_47536-3.25 | CYCLINS |
| Bpl_scaf_4754-0.0 | |
| Bpl_scaf_47540-0.9 | MULTICOPPER OXIDASE-RELATED |
| Bpl_scaf_47541-0.1 | |
| Bpl_scaf_47547-0.15 | ATP-DEPENDENT DNA HELICASE |
| Bpl_scaf_47547-1.10 | METALLOPROTEASE |
| Bpl_scaf_47547-1.9 | PROPERDIN |
| Bpl_scaf_47547-2.0 | |
| Bpl_scaf_47547-3.15 | PROTEIN G1-LIKE2 |
| Bpl_scaf_47547-3.16 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_47547-3.17 | O-ACYLTRANSFERASE |
| Bpl_scaf_47547-3.24 | |
| Bpl_scaf_47548-0.4 | UNCHARACTERIZED |
| Bpl_scaf_47552-0.1 | OVOCHYMASE-RELATED |
| Bpl_scaf_47553-0.1 | ZGC:194242 |
| Bpl_scaf_47554-0.0 | |
| Bpl_scaf_47554-0.2 | |
| Bpl_scaf_47555-0.18 | ANKYRIN REPEAT PROTEIN |
| Bpl_scaf_47557-0.0 | |
| Bpl_scaf_47558-0.9 | ZINC FINGER HIT DOMAIN CONTAINING PROTEIN 2 PROTEIN FON -RELATED |
| Bpl_scaf_47558-1.4 |
