Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s037.g0240.t1 | CHITINASE |
| Lsat_s037.g0241.t1 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
| Lsat_s037.g0242.t1 | CHITINASE |
| Lsat_s037.g0243.t1 | KINETOCHORE-ASSOCIATED PROTEIN NSL1 HOMOLOG |
| Lsat_s037.g0244.t1 | HYDROLASE OF PHP SUPERFAMILY-RELATED PROTEIN |
| Lsat_s037.g0245.t1 | |
| Lsat_s037.g0246.t1 | HYPOTHETICAL HEAT DOMAIN-CONTAINING |
| Lsat_s037.g0247.t1 | UNCHARACTERIZED |
| Lsat_s037.g0248.t1 | CYTOCHROME C OXIDASE PROTEIN 20 |
| Lsat_s037.g0249.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 97 |
| Lsat_s037.g0250.t1 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Lsat_s037.g0251.t1 | SUGAR KINASE |
| Lsat_s037.g0252.t1 | CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN |
| Lsat_s037.g0253.t1 | ZINC FINGER PROTEIN 839 |
| Lsat_s037.g0254.t1 | |
| Lsat_s037.g0255.t1 | ACYLTRANSFERASE |
| Lsat_s037.g0256.t1 | ACYLTRANSFERASE |
| Lsat_s037.g0257.t1 | THIAMIN PYROPHOSPHOKINASE |
| Lsat_s037.g0258.t1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Lsat_s037.g0259.t1 | METHIONINE SYNTHASE |
| Lsat_s037.g0260.t1 | |
| Lsat_s037.g0261.t1 | |
| Lsat_s037.g0262.t1 | PROTEIN EVA-1 |
| Lsat_s037.g0263.t1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s037.g0264.t1 | |
| Lsat_s037.g0265.t1 | SLL0310 PROTEIN |
| Lsat_s037.g0266.t1 | |
| Lsat_s037.g0267.t1 | |
| Lsat_s037.g0268.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Lsat_s037.g0269.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Lsat_s037.g0270.t1 | |
| Lsat_s037.g0271.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Lsat_s037.g0272.t1 | PROTEIN CBG11839-RELATED |
| Lsat_s038.g0001.t1 | ACETOACETYL-COA SYNTHETASE |
| Lsat_s038.g0002.t1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
| Lsat_s038.g0003.t1 | COLLAGEN ALPHA |
| Lsat_s038.g0004.t1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
| Lsat_s038.g0005.t1 | |
| Lsat_s038.g0006.t1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
| Lsat_s038.g0007.t1 | |
| Lsat_s038.g0008.t1 | HIGH-AFFINITY CHOLINE TRANSPORTER 1 |
| Lsat_s038.g0009.t1 | FACT COMPLEX SUBUNIT SSRP1 |
| Lsat_s038.g0010.t1 | UNCHARACTERIZED |
| Lsat_s038.g0011.t1 | HIGH-AFFINITY CHOLINE TRANSPORTER 1 |
| Lsat_s038.g0012.t1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
| Lsat_s038.g0013.t1 | - |
| Lsat_s038.g0014.t1 | |
| Lsat_s038.g0015.t1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Lsat_s038.g0016.t1 | CYSTEINE-RICH SECRETORY PROTEIN-RELATED |
| Lsat_s038.g0017.t1 |
