Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s036.g0240.t1 | RAS-LIKE FAMILY MEMBER 11 |
| Lsat_s036.g0241.t1 | PROTEIN CIP2A |
| Lsat_s036.g0242.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 181 |
| Lsat_s036.g0243.t1 | THIOREDOXIN PEROXIDASE |
| Lsat_s036.g0244.t1 | SENTRIN-SPECIFIC PROTEASE |
| Lsat_s036.g0245.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
| Lsat_s036.g0246.t1 | |
| Lsat_s036.g0247.t1 | RNA BINDING PROTEIN |
| Lsat_s036.g0248.t1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| Lsat_s036.g0249.t1 | 5'-NUCLEOTIDASE DOMAIN-CONTAINING |
| Lsat_s036.g0250.t1 | SORTING NEXIN |
| Lsat_s037.g0001.t1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Lsat_s037.g0002.t1 | |
| Lsat_s037.g0003.t1 | G PROTEIN-COUPLED RECEPTOR |
| Lsat_s037.g0004.t1 | |
| Lsat_s037.g0005.t1 | |
| Lsat_s037.g0006.t1 | MOLTING PROTEIN MLT-4 |
| Lsat_s037.g0007.t1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM |
| Lsat_s037.g0008.t1 | NADPH NITROREDUCTASE |
| Lsat_s037.g0009.t1 | |
| Lsat_s037.g0010.t1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Lsat_s037.g0011.t1 | ADP RIBOSYLATION FACTOR-RELATED |
| Lsat_s037.g0012.t1 | DRAB11-RELATED |
| Lsat_s037.g0013.t1 | UNCHARACTERIZED |
| Lsat_s037.g0014.t1 | DIPEPTIDYL PEPTIDASE III-RELATED |
| Lsat_s037.g0015.t1 | ACYLPHOSPHATASE |
| Lsat_s037.g0016.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
| Lsat_s037.g0017.t1 | |
| Lsat_s037.g0018.t1 | |
| Lsat_s037.g0019.t1 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
| Lsat_s037.g0020.t1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s037.g0021.t1 | - |
| Lsat_s037.g0022.t1 | CALCIUM BINDING PROTEIN |
| Lsat_s037.g0023.t1 | |
| Lsat_s037.g0024.t1 | EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN |
| Lsat_s037.g0025.t1 | CALCIUM BINDING PROTEIN |
| Lsat_s037.g0026.t1 | |
| Lsat_s037.g0027.t1 | |
| Lsat_s037.g0028.t1 | |
| Lsat_s037.g0029.t1 | CALCIUM BINDING PROTEIN |
| Lsat_s037.g0030.t1 | PROTEIN STPG4 |
| Lsat_s037.g0031.t1 | |
| Lsat_s037.g0032.t1 | TETRATRICOPEPTIDE REPEAT PROTEIN, TPR |
| Lsat_s037.g0033.t1 | UBIQUITIN |
| Lsat_s037.g0034.t1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 |
| Lsat_s037.g0035.t1 | |
| Lsat_s037.g0036.t1 | |
| Lsat_s037.g0037.t1 | |
| Lsat_s037.g0038.t1 | |
| Lsat_s037.g0039.t1 |
