Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s035.g0195.t1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Lsat_s035.g0196.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
| Lsat_s035.g0197.t1 | COLD SHOCK DOMAIN CONTAINING PROTEINS |
| Lsat_s035.g0198.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s035.g0199.t1 | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER |
| Lsat_s035.g0200.t1 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
| Lsat_s035.g0201.t1 | PROTEIN CBG26694 |
| Lsat_s035.g0202.t1 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5 |
| Lsat_s035.g0203.t1 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 5 |
| Lsat_s035.g0204.t1 | UNCHARACTERIZED |
| Lsat_s035.g0205.t1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| Lsat_s035.g0206.t1 | LD39211P |
| Lsat_s035.g0207.t1 | UNCHARACTERIZED |
| Lsat_s035.g0208.t1 | LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED |
| Lsat_s035.g0209.t1 | RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE |
| Lsat_s035.g0210.t1 | WD40 REPEAT PROTEIN |
| Lsat_s035.g0211.t1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Lsat_s035.g0212.t1 | QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE |
| Lsat_s035.g0213.t1 | TESTIS-EXPRESSED PROTEIN 15 |
| Lsat_s035.g0214.t1 | |
| Lsat_s035.g0215.t1 | |
| Lsat_s035.g0216.t1 | CONDENSIN |
| Lsat_s035.g0217.t1 | CYCLIN |
| Lsat_s035.g0218.t1 | |
| Lsat_s035.g0219.t1 | RETICULOCALBIN |
| Lsat_s035.g0220.t1 | |
| Lsat_s035.g0221.t1 | |
| Lsat_s035.g0222.t1 | |
| Lsat_s035.g0223.t1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Lsat_s035.g0224.t1 | GUANYLYL CYCLASE |
| Lsat_s035.g0225.t1 | SKI ONCOGENE-RELATED |
| Lsat_s035.g0226.t1 | |
| Lsat_s035.g0227.t1 | |
| Lsat_s035.g0228.t1 | |
| Lsat_s035.g0229.t1 | PROTEIN CBG16428 |
| Lsat_s035.g0230.t1 | TYROSINE-PROTEIN KINASE |
| Lsat_s035.g0231.t1 | |
| Lsat_s035.g0232.t1 | |
| Lsat_s035.g0233.t1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Lsat_s035.g0234.t1 | PROTEIN CBG03580 |
| Lsat_s035.g0235.t1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Lsat_s035.g0236.t1 | |
| Lsat_s035.g0237.t1 | TRANSPORT AND GOLGI ORGANIZATION PROTEIN 6 FAMILY MEMBER |
| Lsat_s035.g0238.t1 | PROTEIN DIAPHANOUS |
| Lsat_s035.g0239.t1 | |
| Lsat_s035.g0240.t1 | PROTEIN DISPATCHED-RELATED |
| Lsat_s035.g0241.t1 | PROTEIN DISPATCHED-RELATED |
| Lsat_s035.g0242.t1 | |
| Lsat_s035.g0243.t1 | PROTEIN DISPATCHED-RELATED |
| Lsat_s035.g0244.t1 | SNF2/RAD54 FAMILY MEMBER |
