Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s035.g0245.t1 | |
| Lsat_s035.g0246.t1 | |
| Lsat_s035.g0247.t1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s035.g0248.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
| Lsat_s035.g0249.t1 | T-BOX PROTEIN-RELATED |
| Lsat_s035.g0250.t1 | |
| Lsat_s035.g0251.t1 | |
| Lsat_s035.g0252.t1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
| Lsat_s035.g0253.t1 | |
| Lsat_s035.g0254.t1 | FMRFAMIDE RECEPTOR-RELATED |
| Lsat_s035.g0255.t1 | |
| Lsat_s036.g0001.t1 | |
| Lsat_s036.g0002.t1 | DYSTROBREVIN BINDING PROTEIN 1 DYSBINDIN |
| Lsat_s036.g0003.t1 | UNCHARACTERIZED |
| Lsat_s036.g0004.t1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Lsat_s036.g0005.t1 | NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN |
| Lsat_s036.g0006.t1 | RAS-RESPONSIVE ELEMENT-BINDING PROTEIN 1 |
| Lsat_s036.g0007.t1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| Lsat_s036.g0008.t1 | FG-GAP REPEAT-CONTAINING PROTEIN |
| Lsat_s036.g0009.t1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| Lsat_s036.g0010.t1 | GALACTOSIDE 2-L-FUCOSYLTRANSFERASE |
| Lsat_s036.g0011.t1 | |
| Lsat_s036.g0012.t1 | OVOCHYMASE-RELATED |
| Lsat_s036.g0013.t1 | OVOCHYMASE-RELATED |
| Lsat_s036.g0014.t1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| Lsat_s036.g0015.t1 | GMP REDUCTASE |
| Lsat_s036.g0016.t1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
| Lsat_s036.g0017.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
| Lsat_s036.g0018.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
| Lsat_s036.g0019.t1 | METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE |
| Lsat_s036.g0020.t1 | ADENYLATE CYCLASE TYPE 1 |
| Lsat_s036.g0021.t1 | BLR2807 PROTEIN |
| Lsat_s036.g0022.t1 | METHYLTHIOADENOSINE/PURINE NUCLEOSIDE PHOSPHORYLASE |
| Lsat_s036.g0023.t1 | SOLUTE CARRIER FAMILY 52 |
| Lsat_s036.g0024.t1 | |
| Lsat_s036.g0025.t1 | IRE1-RELATED |
| Lsat_s036.g0026.t1 | SETA BINDING PROTEIN 1 |
| Lsat_s036.g0027.t1 | TRANSPORT PROTEIN TRAPP |
| Lsat_s036.g0028.t1 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| Lsat_s036.g0029.t1 | GLOMULIN |
| Lsat_s036.g0030.t1 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
| Lsat_s036.g0031.t1 | G PATCH DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s036.g0032.t1 | T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG |
| Lsat_s036.g0033.t1 | L-FUCOSE KINASE |
| Lsat_s036.g0034.t1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Lsat_s036.g0035.t1 | L-FUCOSE KINASE |
| Lsat_s036.g0036.t1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Lsat_s036.g0037.t1 | PHOSPHORYLASE B KINASE REGULATORY SUBUNIT |
| Lsat_s036.g0038.t1 | |
| Lsat_s036.g0039.t1 |
