Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s036.g0190.t1 | |
| Lsat_s036.g0191.t1 | VACUOLAR PROTEIN SORTING VPS16 |
| Lsat_s036.g0192.t1 | NUCLEAR MOVEMENT PROTEIN NUDC |
| Lsat_s036.g0193.t1 | |
| Lsat_s036.g0194.t1 | |
| Lsat_s036.g0195.t1 | |
| Lsat_s036.g0196.t1 | CYTOCHROME P450 FAMILY 7 |
| Lsat_s036.g0197.t1 | OXIDORED-NITRO DOMAIN-CONTAINING PROTEIN |
| Lsat_s036.g0198.t1 | ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE, MITOCHONDRIAL |
| Lsat_s036.g0199.t1 | ACETYL-COA C-ACYLTRANSFERASE |
| Lsat_s036.g0200.t1 | |
| Lsat_s036.g0201.t1 | GH16255P |
| Lsat_s036.g0202.t1 | |
| Lsat_s036.g0203.t1 | SOLUTE CARRIER FAMILY 35 |
| Lsat_s036.g0204.t1 | |
| Lsat_s036.g0205.t1 | |
| Lsat_s036.g0206.t1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 |
| Lsat_s036.g0207.t1 | GH16255P |
| Lsat_s036.g0208.t1 | FMRFAMIDE RECEPTOR-RELATED |
| Lsat_s036.g0209.t1 | |
| Lsat_s036.g0210.t1 | |
| Lsat_s036.g0211.t1 | FMRFAMIDE RECEPTOR-RELATED |
| Lsat_s036.g0212.t1 | SEC63 DOMAIN-CONTAINING |
| Lsat_s036.g0213.t1 | IST1 FAMILY MEMBER |
| Lsat_s036.g0214.t1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
| Lsat_s036.g0215.t1 | CDC37-RELATED |
| Lsat_s036.g0216.t1 | PROTEIN CBG19621 |
| Lsat_s036.g0217.t1 | DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER |
| Lsat_s036.g0218.t1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| Lsat_s036.g0219.t1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| Lsat_s036.g0220.t1 | FERREDOXIN/ADRENODOXIN |
| Lsat_s036.g0221.t1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| Lsat_s036.g0222.t1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| Lsat_s036.g0223.t1 | COATOMER SUBUNIT BETA |
| Lsat_s036.g0224.t1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| Lsat_s036.g0225.t1 | INNER CENTROMERE PROTEIN |
| Lsat_s036.g0226.t1 | MITOCHONDRIAL ATP SYNTHASE B CHAIN |
| Lsat_s036.g0227.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Lsat_s036.g0228.t1 | |
| Lsat_s036.g0229.t1 | BONUS, ISOFORM C-RELATED |
| Lsat_s036.g0230.t1 | |
| Lsat_s036.g0231.t1 | |
| Lsat_s036.g0232.t1 | |
| Lsat_s036.g0233.t1 | |
| Lsat_s036.g0234.t1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
| Lsat_s036.g0235.t1 | URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10 |
| Lsat_s036.g0236.t1 | ACETYLGLUCOSAMINYLTRANSFERASE |
| Lsat_s036.g0237.t1 | CGI-41 METHYLTRANSFERASE |
| Lsat_s036.g0238.t1 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
| Lsat_s036.g0239.t1 | ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 3 |
