Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_40394-17.3 | |
| Bpl_scaf_40394-17.7 | WNT RELATED |
| Bpl_scaf_40394-2.10 | DOWNSTREAM NEIGHBOR OF SON |
| Bpl_scaf_40394-2.11 | DOWNSTREAM NEIGHBOR OF SON |
| Bpl_scaf_40394-2.6 | PROTEIN CBG04600 |
| Bpl_scaf_40394-2.9 | MICROSOMAL GLUTATHIONE S-TRANSFERASE |
| Bpl_scaf_40394-3.3 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_40394-3.4 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_40394-4.14 | |
| Bpl_scaf_40394-4.17 | CHARGED MULTIVESICULAR BODY PROTEIN |
| Bpl_scaf_40394-4.20 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_40394-4.24 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_40394-4.25 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Bpl_scaf_40394-4.26 | MULTICOPPER OXIDASE-RELATED |
| Bpl_scaf_40394-5.0 | |
| Bpl_scaf_40394-5.2 | DNA2/NAM7 HELICASE FAMILY |
| Bpl_scaf_40394-6.10 | |
| Bpl_scaf_40394-6.12 | DNA2/NAM7 HELICASE FAMILY |
| Bpl_scaf_40394-8.10 | ELECTRON TRANSPORT OXIDOREDUCTASE |
| Bpl_scaf_40394-8.3 | |
| Bpl_scaf_40394-9.0 | |
| Bpl_scaf_404-0.16 | BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE |
| Bpl_scaf_404-0.17 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
| Bpl_scaf_404-0.19 | MENIN |
| Bpl_scaf_404-0.21 | ATP-BINDING CASSETTE SUB-FAMILY C |
| Bpl_scaf_404-0.44 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
| Bpl_scaf_4040-0.0 | |
| Bpl_scaf_4040-0.1 | HOMEOBOX PROTEIN ROUGH-RELATED |
| Bpl_scaf_40404-0.13 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
| Bpl_scaf_40404-0.7 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_40404-1.4 | |
| Bpl_scaf_40404-1.5 | - |
| Bpl_scaf_40404-2.10 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_40404-2.16 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| Bpl_scaf_40404-2.9 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| Bpl_scaf_40417-0.5 | DUAL OXIDASE 2 |
| Bpl_scaf_40417-2.13 | CEREBELLIN-RELATED |
| Bpl_scaf_40417-2.14 | MYD88 |
| Bpl_scaf_40417-2.6 | NADPH OXIDASE |
| Bpl_scaf_40423-0.4 | CONTACTIN 5 |
| Bpl_scaf_40426-0.2 | UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN |
| Bpl_scaf_40428-1.5 | |
| Bpl_scaf_40428-2.1 | DNA HELICASE RECQ FAMILY MEMBER |
| Bpl_scaf_40429-0.1 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_40430-0.1 | |
| Bpl_scaf_40435-0.0 | |
| Bpl_scaf_40437-1.3 | ROLLING PEBBLES, ISOFORM B |
| Bpl_scaf_40437-2.8 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_40438-0.0 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_40438-0.4 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
