About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_40227-0.50
Bpl_scaf_40227-0.9RETROVIRAL-LIKE ASPARTIC PROTEASE 1
Bpl_scaf_40243-0.0
Bpl_scaf_40243-0.10
Bpl_scaf_40243-0.12
Bpl_scaf_40255-0.2
Bpl_scaf_40255-0.3KRAB AND ZINC FINGER DOMAIN-CONTAINING
Bpl_scaf_40255-0.31
Bpl_scaf_40255-0.32TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Bpl_scaf_40255-0.33
Bpl_scaf_40255-0.4
Bpl_scaf_40255-0.8
Bpl_scaf_40264-0.11
Bpl_scaf_40264-0.13
Bpl_scaf_40264-0.18
Bpl_scaf_40264-0.19GLYCOPROTEIN HORMONE RECEPTOR
Bpl_scaf_40264-0.3LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Bpl_scaf_40264-0.6
Bpl_scaf_40264-0.8
Bpl_scaf_4027-0.19MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER
Bpl_scaf_4027-0.8AMINO ACID TRANSPORTER
Bpl_scaf_4027-0.9NASOPHARYNGEAL EPITHELIUM SPECIFIC PROTEIN 1
Bpl_scaf_40275-0.05'-NUCLEOTIDASE DOMAIN-CONTAINING
Bpl_scaf_40284-0.14
Bpl_scaf_40284-0.18
Bpl_scaf_40284-0.20
Bpl_scaf_40284-0.25
Bpl_scaf_40284-0.29
Bpl_scaf_40292-0.15
Bpl_scaf_40292-0.17TRANSCRIPTIONAL REPRESSOR PROTEIN YY
Bpl_scaf_40292-0.22MUCOLIPIN
Bpl_scaf_40292-0.23MUCOLIPIN
Bpl_scaf_40292-0.24MUCOLIPIN
Bpl_scaf_40292-0.29TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_40292-0.32
Bpl_scaf_40300-0.11CLASP
Bpl_scaf_40313-0.21
Bpl_scaf_40313-0.30PROTEIN BARK BEETLE
Bpl_scaf_40313-0.32
Bpl_scaf_40313-0.33MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Bpl_scaf_40313-0.34
Bpl_scaf_40313-0.37
Bpl_scaf_40313-0.4
Bpl_scaf_40323-0.12UNCHARACTERIZED
Bpl_scaf_40323-0.13N-LINKED OLIGOSACCHARIDE PROCESSING
Bpl_scaf_40323-0.20SGNH_HYDRO DOMAIN-CONTAINING PROTEIN
Bpl_scaf_40323-0.22AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED
Bpl_scaf_40324-1.3GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
Bpl_scaf_4034-0.10RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Bpl_scaf_4034-0.11
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