Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_39658-1.20 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11 |
| Bpl_scaf_39658-1.21 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11 |
| Bpl_scaf_39658-1.23 | L 2 01289 |
| Bpl_scaf_39670-0.0 | |
| Bpl_scaf_39674-1.18 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_39674-1.19 | |
| Bpl_scaf_39674-1.42 | |
| Bpl_scaf_39674-1.43 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_39674-1.46 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_39674-1.51 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_39674-1.64 | BTB/POZ DOMAIN-CONTAINING |
| Bpl_scaf_39674-1.66 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
| Bpl_scaf_39680-0.0 | |
| Bpl_scaf_39680-0.4 | |
| Bpl_scaf_39680-0.5 | |
| Bpl_scaf_39680-1.0 | |
| Bpl_scaf_39680-1.1 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_39680-2.11 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_39680-2.14 | ENTEROCHELIN ESTERASE-RELATED |
| Bpl_scaf_39680-2.36 | UNCHARACTERIZED |
| Bpl_scaf_39680-2.4 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Bpl_scaf_39680-2.6 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_39689-0.3 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_39689-0.4 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_39689-0.6 | |
| Bpl_scaf_39689-0.9 | |
| Bpl_scaf_39689-1.1 | |
| Bpl_scaf_39689-1.3 | |
| Bpl_scaf_39689-2.11 | SIMILAR TO RIKEN CDNA E130308A19 |
| Bpl_scaf_39689-2.12 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 8 |
| Bpl_scaf_39689-2.13 | |
| Bpl_scaf_39689-2.14 | |
| Bpl_scaf_39694-0.0 | |
| Bpl_scaf_39700-0.20 | PROTEIN CBG15099 |
| Bpl_scaf_39700-0.5 | SMARCE1 REGULATOR OF CHROMATIN |
| Bpl_scaf_39700-1.12 | |
| Bpl_scaf_39700-1.13 | DNA REPLICATION REGULATOR DPB11-RELATED |
| Bpl_scaf_39700-2.15 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Bpl_scaf_39700-2.18 | |
| Bpl_scaf_39700-2.4 | |
| Bpl_scaf_39700-2.5 | |
| Bpl_scaf_39700-2.9 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Bpl_scaf_39708-0.1 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_39709-0.1 | OS10G0105400 PROTEIN |
| Bpl_scaf_39710-0.2 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_39710-0.6 | |
| Bpl_scaf_39710-1.4 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_39710-1.5 | MONOCARBOXYLATE TRANSPORTER |
| Bpl_scaf_39710-2.14 | |
| Bpl_scaf_39710-2.16 | RHO GUANINE EXCHANGE FACTOR-RELATED |
