Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_39376-0.12 | |
| Bpl_scaf_39376-0.15 | |
| Bpl_scaf_39376-0.2 | |
| Bpl_scaf_39376-0.8 | |
| Bpl_scaf_39399-0.1 | GH04784P |
| Bpl_scaf_39399-1.21 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_39399-1.23 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_39399-1.8 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM |
| Bpl_scaf_39399-2.1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
| Bpl_scaf_39399-3.4 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
| Bpl_scaf_39399-5.19 | |
| Bpl_scaf_39399-5.21 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_39399-5.4 | |
| Bpl_scaf_39400-0.1 | |
| Bpl_scaf_39400-0.17 | NG37 |
| Bpl_scaf_39400-0.18 | |
| Bpl_scaf_39415-0.10 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Bpl_scaf_39415-0.13 | ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED |
| Bpl_scaf_39415-0.20 | FUMARYLACETOACETASE |
| Bpl_scaf_39424-0.5 | |
| Bpl_scaf_39432-0.0 | |
| Bpl_scaf_39442-0.1 | |
| Bpl_scaf_39442-0.15 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Bpl_scaf_39442-0.2 | |
| Bpl_scaf_39442-0.20 | |
| Bpl_scaf_39442-0.21 | |
| Bpl_scaf_39442-0.22 | |
| Bpl_scaf_39442-0.5 | |
| Bpl_scaf_39451-0.0 | |
| Bpl_scaf_39460-0.0 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Bpl_scaf_39460-0.2 | |
| Bpl_scaf_39475-0.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7 |
| Bpl_scaf_39475-1.10 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7 |
| Bpl_scaf_39475-1.5 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7 |
| Bpl_scaf_39475-4.15 | SREK1IP1 FAMILY MEMBER |
| Bpl_scaf_39475-4.8 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| Bpl_scaf_39475-4.9 | SMALL INTEGRAL MEMBRANE PROTEIN 30 |
| Bpl_scaf_39475-5.4 | INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG |
| Bpl_scaf_39475-5.5 | N6-ADENOSINE-METHYLTRANSFERASE |
| Bpl_scaf_39475-6.10 | 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE |
| Bpl_scaf_39475-6.11 | VITELLOGENIN-RELATED |
| Bpl_scaf_39475-6.12 | |
| Bpl_scaf_39475-6.9 | |
| Bpl_scaf_3948-0.14 | |
| Bpl_scaf_3948-0.15 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Bpl_scaf_3948-0.18 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Bpl_scaf_3948-0.2 | |
| Bpl_scaf_39480-0.5 | |
| Bpl_scaf_39480-0.7 | NG5 |
| Bpl_scaf_39480-0.8 | NG5 |
