About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_39136-3.27LD33804P
Bpl_scaf_39137-0.2
Bpl_scaf_39138-0.0
Bpl_scaf_3914-0.0
Bpl_scaf_39141-0.1
Bpl_scaf_39141-0.4
Bpl_scaf_39145-0.2INTEGRIN ALPHA
Bpl_scaf_39146-0.2
Bpl_scaf_39147-0.5INHIBITOR OF APOPTOSIS
Bpl_scaf_39147-1.5
Bpl_scaf_39147-2.11
Bpl_scaf_39147-2.12
Bpl_scaf_39147-3.3GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Bpl_scaf_39147-3.6METALLOPROTEASE INHIBITOR
Bpl_scaf_39147-3.7U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10
Bpl_scaf_39149-0.1RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Bpl_scaf_39151-0.7
Bpl_scaf_39153-0.3
Bpl_scaf_39153-0.7SPECKLE-TYPE POZ PROTEIN
Bpl_scaf_39154-0.2HRAS-LIKE SUPPRESSOR - RELATED
Bpl_scaf_39155-0.4
Bpl_scaf_39156-0.6
Bpl_scaf_39158-0.0BONUS, ISOFORM C-RELATED
Bpl_scaf_39158-1.8
Bpl_scaf_39158-1.9
Bpl_scaf_39158-2.4
Bpl_scaf_39158-3.11
Bpl_scaf_39158-3.12
Bpl_scaf_39163-0.2LYR MOTIF-CONTAINING PROTEIN 2
Bpl_scaf_39207-0.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Bpl_scaf_39213-0.0
Bpl_scaf_39227-0.2TRANSPOSABLE ELEMENT-RELATED
Bpl_scaf_3923-0.16ECDYSONE-INDUCIBLE GENE E1, ISOFORM A
Bpl_scaf_39237-0.4INTEGRIN ALPHA
Bpl_scaf_39264-0.4N-LYSINE METHYLTRANSFERASE KMT5A
Bpl_scaf_39274-0.41-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED
Bpl_scaf_39279-0.13CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_39279-0.4
Bpl_scaf_39279-0.5
Bpl_scaf_39297-0.5
Bpl_scaf_39298-0.14SCAVENGER RECEPTOR CLASS F
Bpl_scaf_3930-0.0CADHERIN-87A
Bpl_scaf_3930-0.1CADHERIN-23
Bpl_scaf_39308-0.4ATP-BINDING CASSETTE SUB-FAMILY C
Bpl_scaf_39318-0.13RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_39338-0.3ZGC:174356
Bpl_scaf_39338-0.6AMINO ACID TRANSPORTER
Bpl_scaf_39360-0.12
Bpl_scaf_39360-0.15FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_39360-0.18MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
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