About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_38390-4.14ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE
Bpl_scaf_38390-4.27RNA-BINDING PROTEIN RELATED
Bpl_scaf_38390-4.5MEIOTIC RECOMBINATION PROTEIN SPO11
Bpl_scaf_38390-4.6HEAT SHOCK PROTEIN HSP-12.2-RELATED
Bpl_scaf_38390-4.7ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Bpl_scaf_38390-4.9
Bpl_scaf_38396-0.0
Bpl_scaf_38396-0.6GLUTATHIONE S-TRANSFERASE-RELATED
Bpl_scaf_38411-0.0
Bpl_scaf_38411-0.1
Bpl_scaf_38411-0.2
Bpl_scaf_38428-0.0
Bpl_scaf_38428-0.3
Bpl_scaf_38460-0.11CYSTEINE PROTEASE FAMILY C1-RELATED
Bpl_scaf_38460-0.14TOLL-LIKE RECEPTOR
Bpl_scaf_3847-0.0BLR2807 PROTEIN
Bpl_scaf_38475-0.0OVOCHYMASE-RELATED
Bpl_scaf_38475-0.11
Bpl_scaf_38475-0.7APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_38475-0.8ACROSIN-RELATED
Bpl_scaf_38476-0.5
Bpl_scaf_38476-0.6
Bpl_scaf_38476-0.9BONUS, ISOFORM C-RELATED
Bpl_scaf_38476-1.3
Bpl_scaf_38476-1.8
Bpl_scaf_38476-2.1OS10G0105400 PROTEIN
Bpl_scaf_38476-2.8
Bpl_scaf_38476-3.7URIDINE PHOSPHORYLASE
Bpl_scaf_38476-4.6GLUTAMATE DECARBOXYLASE-RELATED
Bpl_scaf_38476-5.10VACUOLAR PROTEIN SORTING VPS16
Bpl_scaf_38476-5.3VACUOLAR PROTEIN SORTING VPS16
Bpl_scaf_38476-5.6HOMEOBOX PROTEIN MOX
Bpl_scaf_38482-0.13ZINC FINGER PROTEIN
Bpl_scaf_38498-0.13SIMILAR TO RIKEN CDNA E130308A19
Bpl_scaf_38498-0.3
Bpl_scaf_38498-0.7
Bpl_scaf_38511-0.0
Bpl_scaf_38511-0.1
Bpl_scaf_38538-0.0
Bpl_scaf_38538-0.16
Bpl_scaf_38538-0.17
Bpl_scaf_38538-0.18
Bpl_scaf_38552-0.0
Bpl_scaf_38559-0.4SIDESTEP PROTEIN
Bpl_scaf_38569-0.13ATAXIN-10
Bpl_scaf_38569-0.14SHORT-CHAIN DEHYDROGENASE/REDUCTASE
Bpl_scaf_38570-0.17ZGC:195170
Bpl_scaf_38570-0.3APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Bpl_scaf_38570-0.6SI:CH211-108C17.2-RELATED-RELATED
Bpl_scaf_38570-1.0
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