Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_38274-0.6 | |
| Bpl_scaf_38275-0.3 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Bpl_scaf_38276-0.5 | |
| Bpl_scaf_38276-0.7 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Bpl_scaf_38276-1.2 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Bpl_scaf_38276-3.12 | |
| Bpl_scaf_38276-3.13 | |
| Bpl_scaf_38276-3.14 | |
| Bpl_scaf_38276-3.15 | |
| Bpl_scaf_38277-0.0 | THAP DOMAIN PROTEIN |
| Bpl_scaf_38279-0.5 | CYTOCHROME P450 508A4-RELATED |
| Bpl_scaf_38280-0.0 | |
| Bpl_scaf_38285-0.0 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Bpl_scaf_38287-0.3 | |
| Bpl_scaf_38287-1.0 | |
| Bpl_scaf_38287-1.10 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED |
| Bpl_scaf_38287-1.8 | SULFOTRANSFERASE SULT |
| Bpl_scaf_38287-2.11 | THO COMPLEX SUBUNIT 1 |
| Bpl_scaf_38287-2.12 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER |
| Bpl_scaf_38287-2.13 | SOLUTE CARRIER FAMILY 35 MEMBER B |
| Bpl_scaf_38287-3.16 | UNCHARACTERIZED |
| Bpl_scaf_38287-3.17 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7 |
| Bpl_scaf_38287-3.18 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| Bpl_scaf_38287-3.19 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| Bpl_scaf_38288-0.5 | |
| Bpl_scaf_38288-0.6 | ZINC FINGER PROTEIN |
| Bpl_scaf_38288-1.9 | PROTEIN CBG12054-RELATED |
| Bpl_scaf_38288-11.22 | CAMK FAMILY PROTEIN KINASE |
| Bpl_scaf_38288-11.23 | DNA-DIRECTED RNA POLYMERASE II, III |
| Bpl_scaf_38288-11.24 | 50S RIBOSOMAL PROTEIN L4 |
| Bpl_scaf_38288-11.25 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN 26 |
| Bpl_scaf_38288-11.38 | OXIDASE/PEROXIDASE |
| Bpl_scaf_38288-2.7 | MED-6-RELATED |
| Bpl_scaf_38288-2.8 | PROTEIN CBG12054-RELATED |
| Bpl_scaf_38288-2.9 | UNCHARACTERIZED |
| Bpl_scaf_38288-3.25 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-3.26 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-3.5 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_38288-3.6 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_38288-3.9 | NAD P H OXIDOREDUCTASE-RELATED |
| Bpl_scaf_38288-4.16 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-4.4 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-5.42 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-5.43 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-5.44 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-5.46 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-6.15 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-6.16 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-6.9 | RHO FAMILY GTPASE |
| Bpl_scaf_38288-7.5 | SEL-1-LIKE PROTEIN |
