About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_38288-7.7TRANSMEMBRANE PROTEIN 251
Bpl_scaf_38288-8.11PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Bpl_scaf_38288-8.13
Bpl_scaf_38288-8.14
Bpl_scaf_38288-8.16PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Bpl_scaf_38288-9.05-HYDROXYTRYPTAMINE RECEPTOR
Bpl_scaf_3829-0.10YEATS DOMAIN
Bpl_scaf_3829-0.11YEATS DOMAIN
Bpl_scaf_3829-0.7NGFI-A BINDING PROTEIN
Bpl_scaf_3829-1.226S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3
Bpl_scaf_3829-3.0NEUROTRANSMITTER GATED ION CHANNEL
Bpl_scaf_3829-4.19ATP-BINDING CASSETTE SUB-FAMILY C
Bpl_scaf_3829-4.20XPA-BINDING PROTEIN 1-RELATED
Bpl_scaf_3829-4.21PROTEIN KINASE RELATED
Bpl_scaf_3829-4.57SUPPRESSOR OF TY 4
Bpl_scaf_3829-4.60
Bpl_scaf_3829-4.61CEREBELLIN-RELATED
Bpl_scaf_38293-0.4CXC DOMAIN-CONTAINING PROTEIN-RELATED
Bpl_scaf_38293-0.5
Bpl_scaf_38295-0.0CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18
Bpl_scaf_38296-0.1
Bpl_scaf_38297-0.12
Bpl_scaf_38297-0.13
Bpl_scaf_38299-0.17STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2
Bpl_scaf_38299-0.18
Bpl_scaf_38299-1.16
Bpl_scaf_38299-1.23
Bpl_scaf_38299-2.27
Bpl_scaf_38299-2.28
Bpl_scaf_38299-2.29
Bpl_scaf_38299-2.30
Bpl_scaf_38299-2.31
Bpl_scaf_38299-3.18
Bpl_scaf_38299-3.20
Bpl_scaf_38299-3.25
Bpl_scaf_38299-3.26CADHERIN-87A
Bpl_scaf_38299-3.29CADHERIN-87A
Bpl_scaf_38299-3.32PUTATIVE-RELATED
Bpl_scaf_38305-0.4FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Bpl_scaf_38305-0.8BONUS, ISOFORM C-RELATED
Bpl_scaf_38314-0.7
Bpl_scaf_38315-0.3CALCIUM BINDING PROTEIN
Bpl_scaf_38322-0.0
Bpl_scaf_38322-0.14
Bpl_scaf_38322-0.2
Bpl_scaf_38338-0.11MITOCHONDRIA-EATING PROTEIN-RELATED
Bpl_scaf_38338-0.12
Bpl_scaf_38338-1.14
Bpl_scaf_38338-1.15MITOCHONDRIA-EATING PROTEIN-RELATED
Bpl_scaf_38338-1.16
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