Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_38703-14.44 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_38703-14.45 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_38703-15.2 | VERTNIN |
| Bpl_scaf_38703-15.3 | |
| Bpl_scaf_38703-2.1 | |
| Bpl_scaf_38703-2.2 | |
| Bpl_scaf_38703-2.4 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| Bpl_scaf_38703-3.10 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| Bpl_scaf_38703-3.2 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Bpl_scaf_38703-3.5 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| Bpl_scaf_38703-4.17 | JNK/SAPK-ASSOCIATED PROTEIN |
| Bpl_scaf_38703-4.18 | - |
| Bpl_scaf_38703-5.1 | ADENYLATE CYCLASE TYPE 1 |
| Bpl_scaf_38703-6.10 | ADENYLATE CYCLASE TYPE 1 |
| Bpl_scaf_38703-6.13 | CBP/P300-RELATED |
| Bpl_scaf_38703-7.10 | ZGC:158260 |
| Bpl_scaf_38703-7.11 | |
| Bpl_scaf_38703-7.24 | HL07962P-RELATED |
| Bpl_scaf_38703-7.9 | GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE |
| Bpl_scaf_38703-8.10 | PERICENTRIOLAR MATERIAL 1-RELATED |
| Bpl_scaf_38703-8.9 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 |
| Bpl_scaf_38703-9.3 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
| Bpl_scaf_38705-0.1 | |
| Bpl_scaf_38705-0.10 | TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR |
| Bpl_scaf_38705-0.11 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_38705-0.12 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Bpl_scaf_38705-0.22 | OS10G0105400 PROTEIN |
| Bpl_scaf_38714-0.7 | |
| Bpl_scaf_38714-1.5 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Bpl_scaf_38714-1.6 | |
| Bpl_scaf_38714-1.8 | |
| Bpl_scaf_38714-1.9 | |
| Bpl_scaf_38714-2.11 | ORGANIC ANION TRANSPORTER |
| Bpl_scaf_38714-2.12 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
| Bpl_scaf_38714-2.3 | ORGANIC ANION TRANSPORTER |
| Bpl_scaf_38714-3.11 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_38714-3.13 | |
| Bpl_scaf_38714-3.14 | ORGANIC ANION TRANSPORTER |
| Bpl_scaf_38714-4.7 | INNEXIN |
| Bpl_scaf_38714-5.18 | HELIX LOOP HELIX PROTEIN 21-RELATED |
| Bpl_scaf_38714-5.8 | PKSB |
| Bpl_scaf_38714-5.9 | BYSTIN |
| Bpl_scaf_38714-6.1 | |
| Bpl_scaf_38714-6.14 | ZGC:195170 |
| Bpl_scaf_38714-6.16 | |
| Bpl_scaf_38714-6.4 | AGAP009604-PA |
| Bpl_scaf_38714-7.13 | INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN,N-TERMINAL |
| Bpl_scaf_38714-7.14 | ATP-DEPENDENT RNA AND DNA HELICASE |
| Bpl_scaf_38714-7.18 | ZINC FINGER PROTEIN |
| Bpl_scaf_38714-7.20 |
