About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_40096-0.6
Bpl_scaf_40104-0.11
Bpl_scaf_40104-0.12
Bpl_scaf_40104-0.13
Bpl_scaf_40104-0.14
Bpl_scaf_40104-0.15
Bpl_scaf_40105-3.6NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT
Bpl_scaf_40105-3.9LATROPHILIN RECEPTOR-LIKE PROTEIN A
Bpl_scaf_40105-4.14
Bpl_scaf_40105-5.10
Bpl_scaf_40105-5.17KNIRPS-RELATED PROTEIN-RELATED
Bpl_scaf_40105-5.8DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
Bpl_scaf_4011-0.5PROTEIN CBG26694
Bpl_scaf_40119-0.10UNCHARACTERIZED
Bpl_scaf_40119-0.12
Bpl_scaf_40119-0.15COILED-COIL DOMAIN-CONTAINING PROTEIN 24
Bpl_scaf_40119-0.16SERINE/THREONINE PROTEIN KINASE
Bpl_scaf_40119-0.2
Bpl_scaf_40119-0.8
Bpl_scaf_40129-0.4
Bpl_scaf_40129-0.5SORTILIN RELATED
Bpl_scaf_40129-0.8PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_40133-0.0SMALL CONDUCTANCE CALCIUM-ACTIVATED POTASSIUM CHANNEL
Bpl_scaf_40143-0.3GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_40143-0.4GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_40143-0.6
Bpl_scaf_40143-0.7GTPASE, IMAP FAMILY MEMBER-RELATED
Bpl_scaf_40162-0.0
Bpl_scaf_4017-0.15
Bpl_scaf_4017-0.16CONTACTIN 5
Bpl_scaf_4017-0.7
Bpl_scaf_40172-0.0D-RIBITOL-5-PHOSPHATE CYTIDYLYLTRANSFERASE
Bpl_scaf_40172-0.4TRANSPOSON
Bpl_scaf_40172-0.6
Bpl_scaf_40172-0.8
Bpl_scaf_40178-0.11
Bpl_scaf_40178-0.2
Bpl_scaf_40178-0.6SIMILAR TO RIKEN CDNA E130308A19
Bpl_scaf_40188-0.1
Bpl_scaf_40188-0.6
Bpl_scaf_40197-0.10BONUS, ISOFORM C-RELATED
Bpl_scaf_40207-0.0
Bpl_scaf_40207-0.14DUF3504 DOMAIN-CONTAINING PROTEIN
Bpl_scaf_40207-0.16
Bpl_scaf_40207-0.20
Bpl_scaf_40227-0.12BTB/POZ DOMAIN-CONTAINING
Bpl_scaf_40227-0.15ACTIN
Bpl_scaf_40227-0.4ATP-DEPENDENT DNA HELICASE
Bpl_scaf_40227-0.48BTB/POZ DOMAIN-CONTAINING
Bpl_scaf_40227-0.49BTB/POZ DOMAIN-CONTAINING
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