Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s027.g0345.t1 | LIPID PHOSPHATE PHOSPHATASE |
Lsat_s027.g0346.t1 | CALCYPHOSIN |
Lsat_s027.g0347.t1 | |
Lsat_s027.g0348.t1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
Lsat_s027.g0349.t1 | |
Lsat_s027.g0350.t1 | |
Lsat_s027.g0351.t1 | |
Lsat_s027.g0352.t1 | BLR2807 PROTEIN |
Lsat_s027.g0353.t1 | PROTEIN CBG12474 |
Lsat_s027.g0354.t1 | CONDENSIN |
Lsat_s028.g0001.t1 | |
Lsat_s028.g0002.t1 | CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEIN |
Lsat_s028.g0003.t1 | PROTEIN CBG12054-RELATED |
Lsat_s028.g0004.t1 | FIBROBLAST GROWTH FACTOR |
Lsat_s028.g0005.t1 | NUDIX HYDROLASE RELATED |
Lsat_s028.g0006.t1 | RNA RECOGNITION RRM/RNP DOMAIN |
Lsat_s028.g0007.t1 | AAA-FAMILY ATPASE |
Lsat_s028.g0008.t1 | RNA RECOGNITION RRM/RNP DOMAIN |
Lsat_s028.g0009.t1 | |
Lsat_s028.g0010.t1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
Lsat_s028.g0011.t1 | |
Lsat_s028.g0012.t1 | |
Lsat_s028.g0013.t1 | |
Lsat_s028.g0014.t1 | |
Lsat_s028.g0015.t1 | |
Lsat_s028.g0016.t1 | WHEY ACDIC PROTEIN WAP |
Lsat_s028.g0017.t1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
Lsat_s028.g0018.t1 | |
Lsat_s028.g0019.t1 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Lsat_s028.g0020.t1 | |
Lsat_s028.g0021.t1 | |
Lsat_s028.g0022.t1 | |
Lsat_s028.g0023.t1 | PROTEIN PHOSPHATASE METHYLESTERASE-1 RELATED |
Lsat_s028.g0024.t1 | UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN |
Lsat_s028.g0025.t1 | 40S RIBOSOMAL PROTEIN S3A |
Lsat_s028.g0026.t1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
Lsat_s028.g0027.t1 | |
Lsat_s028.g0028.t1 | |
Lsat_s028.g0029.t1 | |
Lsat_s028.g0030.t1 | |
Lsat_s028.g0031.t1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
Lsat_s028.g0032.t1 | MITOGEN-ACTIVATED PROTEIN KINASE |
Lsat_s028.g0033.t1 | FGF RECEPTOR ACTIVATING PROTEIN 1 |
Lsat_s028.g0034.t1 | LUPUS LA PROTEIN-RELATED |
Lsat_s028.g0035.t1 | |
Lsat_s028.g0036.t1 | |
Lsat_s028.g0037.t1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
Lsat_s028.g0038.t1 | ARGINYL-TRNA SYNTHETASE |
Lsat_s028.g0039.t1 | B-LYMPHOCYTE ANTIGEN-RELATED |
Lsat_s028.g0040.t1 | LD33804P |