About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides61074ZGC:195170
Paelopatides61075ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides61076SEMINAL PLASMA PROTEIN
Paelopatides61077THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
Paelopatides61078-
Paelopatides61079WSCD FAMILY MEMBER CG9164
Paelopatides61080-
Paelopatides61081ADHESION G-PROTEIN COUPLED RECEPTOR
Paelopatides61082DNA LIGASE
Paelopatides61083DNA LIGASE
Paelopatides61084WSCD FAMILY MEMBER CG9164
Paelopatides61085REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides61086DNA LIGASE
Paelopatides61087ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides61088IG-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides61089-
Paelopatides61090NEPHRIN
Paelopatides61091TRANSPOSABLE ELEMENT-RELATED
Paelopatides61092TRIACYLGLYCEROL LIPASE
Paelopatides61093PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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