About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides61094TRIACYLGLYCEROL LIPASE
Paelopatides61095METALLOPROTEASE INHIBITOR
Paelopatides61096METALLOPROTEASE INHIBITOR
Paelopatides61097THREONINE SYNTHASE-LIKE 1
Paelopatides61098THREONINE SYNTHASE-LIKE 1
Paelopatides61099SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSED
Paelopatides61100PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides61101DIVALENT CATION TRANSPORTER SOLUTE CARRIER FAMILY 41
Paelopatides61102SMALL INTEGRAL MEMBRANE PROTEIN 4
Paelopatides61103G/T AND G/U MISMATCH-SPECIFIC DNA GLYCOSYLASE
Paelopatides61104SWI/SNF-RELATED
Paelopatides61105SWI/SNF-RELATED
Paelopatides61106SWI/SNF-RELATED
Paelopatides61107-
Paelopatides61108PROTEIN CBG26694
Paelopatides61109ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides61110PARANEOPLASTIC ANTIGEN
Paelopatides61111DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides61112TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides61113UNCHARACTERIZED
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