About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides61034SODIUM-BILE ACID COTRANSPORTER
Paelopatides61035SODIUM-BILE ACID COTRANSPORTER
Paelopatides61036PORCUPINE
Paelopatides61037UNCHARACTERIZED
Paelopatides61038FOLLICULIN FAMILY MEMBER
Paelopatides61039-
Paelopatides61040ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides61041METALLO PHOSPHOESTERASE RELATED
Paelopatides61042-
Paelopatides61043ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides61044REVERSE TRANSCRIPTASES
Paelopatides61045GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED
Paelopatides61046QUINONE OXIDOREDUCTASE-LIKE PROTEIN 1
Paelopatides61047QUINONE OXIDOREDUCTASE-LIKE PROTEIN 1
Paelopatides61048-
Paelopatides61049ENDONUCLEASE-RELATED
Paelopatides61050-
Paelopatides61051RETROTRANSPOSON
Paelopatides61052EPM2A-INTERACTING PROTEIN 1
Paelopatides61053EPM2A-INTERACTING PROTEIN 1
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