About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60950-
Paelopatides60951PROTEIN CBG26694
Paelopatides60952-
Paelopatides60953OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides60954-
Paelopatides60955PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60956DNA REPAIR PROTEIN XRCC2
Paelopatides60957DNA REPAIR PROTEIN XRCC2
Paelopatides60958THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED
Paelopatides60959THYROID HORMONE RECEPTOR-ASSOCIATED PROTEIN-RELATED
Paelopatides60960-
Paelopatides60961DNA-DIRECTED RNA POLYMERASE II, III
Paelopatides60962INNER MEMBRANE PROTEIN YCCF
Paelopatides60963VACUOLAR CALCIUM ION TRANSPORTER
Paelopatides60964VACUOLAR CALCIUM ION TRANSPORTER
Paelopatides60965REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60966STEERIN
Paelopatides60967PROTEIN CBG26694
Paelopatides60968PROTEIN CBG26694
Paelopatides60969REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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