About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60888FANCONI ANEMIA GROUP E PROTEIN
Paelopatides60889CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
Paelopatides60890CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60891CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60892BUCENTAUR RELATED
Paelopatides60893PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60894-
Paelopatides60895RAI16 PROTEIN-RELATED
Paelopatides60896TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides60897FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60898BUCENTAUR RELATED
Paelopatides60899REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60900FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60901FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60902-
Paelopatides60903PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60904TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60905ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60908ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides60909-
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