About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60787METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides60788METABOTROPIC GLUTAMATE RECEPTOR
Paelopatides60789CENTROSOMAL PROTEIN OF 162 KDA
Paelopatides60790REVERSE TRANSCRIPTASE
Paelopatides60791TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60792ENZYMATIC POLYPROTEIN-RELATED
Paelopatides60793ENDONUCLEASE-RELATED
Paelopatides60794PROTEIN CBG26694
Paelopatides60795-
Paelopatides60796CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60797CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60798CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60800-
Paelopatides60801SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN
Paelopatides60802-
Paelopatides60803TRANSMEMBRANE PROTEASE SERINE
Paelopatides60804TFIIH, POLYPEPTIDE 4
Paelopatides60805LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN
Paelopatides60806OROTATE PHOSPHORIBOSYLTRANSFERASE
Paelopatides60807TUBULIN POLYGLUTAMYLASE
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