About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60808-
Paelopatides60809-
Paelopatides60810EPM2A-INTERACTING PROTEIN 1
Paelopatides60811BONUS, ISOFORM C-RELATED
Paelopatides60812TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60813SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides60814REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60815SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
Paelopatides60816TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60817RETINOL DEHYDROGENASE-RELATED
Paelopatides60818-
Paelopatides60819-
Paelopatides60820-
Paelopatides60821ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60822UNCHARACTERIZED
Paelopatides60823COMM DOMAIN-CONTAINING PROTEIN 1
Paelopatides60824HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides60825VACUOLAR SORTING PROTEIN VPS29
Paelopatides60826VOLTAGE-DEPENDENT CALCIUM CHANNEL GAMMA SUBUNIT
Paelopatides60827PROTEIN CBG26694
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