About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60663-
Paelopatides60664-
Paelopatides60665-
Paelopatides60666-
Paelopatides60667KRUEPPEL-LIKE TRANSCRIPTION FACTOR
Paelopatides60668-
Paelopatides60669ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides60670COMM DOMAIN CONTAINING PROTEIN 2
Paelopatides60671ALMS1-RELATED
Paelopatides60672RIBOSOMAL PROTEIN L2
Paelopatides60673RIBOSOMAL PROTEIN L2
Paelopatides60674ADHESION G-PROTEIN COUPLED RECEPTOR
Paelopatides60675CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60676TYROSINE-PROTEIN KINASE
Paelopatides60677CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60678CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60679CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60680TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60681NETRIN RECEPTOR UNC5
Paelopatides60682-
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