About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60581-
Paelopatides60582MUCIN 4-RELATED
Paelopatides60583MUCIN 4-RELATED
Paelopatides60585RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4
Paelopatides60586SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN
Paelopatides60587RETROTRANSPOSON
Paelopatides60588RETROTRANSPOSON
Paelopatides60589MULTICOPPER OXIDASE-RELATED
Paelopatides60590-
Paelopatides60591-
Paelopatides60592-
Paelopatides60593GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
Paelopatides60594GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
Paelopatides60595POL PROTEIN
Paelopatides60596PROTEIN CBG26694
Paelopatides60597GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
Paelopatides60598GLYCINE-, GLUTAMATE-, THIENYLCYCLOHEXYLPIPERIDINE-BINDING PROTEIN
Paelopatides60599-
Paelopatides60600CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60601REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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