About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60477ELONGIN-C
Paelopatides60478FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60479FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60480ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60481FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides60482-
Paelopatides60483NCK-ASSOCIATED PROTEIN 5
Paelopatides60484-
Paelopatides60485HL07962P-RELATED
Paelopatides60486-
Paelopatides60487TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60488-
Paelopatides60489REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60490ADENOSINE/GUANOSINE DIPHOSPHATASE
Paelopatides60491TRANSLATION INITIATION FACTOR IF-2-RELATED
Paelopatides60492F-BOX ONLY PROTEIN 33
Paelopatides60493MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
Paelopatides60494-
Paelopatides60495-
Paelopatides60496PEPTIDASE
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