About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60497RETROTRANSPOSON
Paelopatides60498-
Paelopatides60499-
Paelopatides60500PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides60501-
Paelopatides60502HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides60503ADENINE DNA GLYCOSYLASE
Paelopatides60504ADENINE DNA GLYCOSYLASE
Paelopatides60505-
Paelopatides60507-
Paelopatides60508-
Paelopatides60509SERINE/THREONINE-PROTEIN KINASE
Paelopatides60510-
Paelopatides60511SYNDECAN
Paelopatides60512DOMON DOMAIN-CONTAINING PROTEIN FRRS1L
Paelopatides60513-
Paelopatides60514PROTEIN CBG26694
Paelopatides60515ENDONUCLEASE-RELATED
Paelopatides60516PARANEOPLASTIC ANTIGEN
Paelopatides60517-
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