About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60518-
Paelopatides60519-
Paelopatides60520-
Paelopatides60521REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60522ZGC:195170
Paelopatides60523SI:CH211-108C17.2-RELATED-RELATED
Paelopatides60524GLUTAMATE--TRNA LIGASE
Paelopatides60525UNCHARACTERIZED
Paelopatides60526PROTEIN CBG26694
Paelopatides60527PROTEIN CBG26694
Paelopatides60528REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60529EQUILIBRATIVE NUCLEOSIDE TRANSPORTER
Paelopatides60530ENDONUCLEASE-RELATED
Paelopatides60531POL PROTEIN
Paelopatides60532PHOSPHORYN, PUTATIVE-RELATED-RELATED
Paelopatides60533ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60534-
Paelopatides60535EXPRESSED PROTEIN
Paelopatides60536-
Paelopatides60537DYNACTIN 1-RELATED MICROTUBULE-BINDING
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