About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60602-
Paelopatides60603-
Paelopatides60604PROTEIN KINASE C-BINDING PROTEIN 1
Paelopatides60605PROTEIN KINASE C-BINDING PROTEIN 1
Paelopatides60606ENDONUCLEASE-RELATED
Paelopatides60607-
Paelopatides60608-
Paelopatides60609ATP-DEPENDENT DNA HELICASE
Paelopatides60610GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA
Paelopatides60611PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER
Paelopatides60612-
Paelopatides60613PROTEIN CBG26694
Paelopatides60614ENDONUCLEASE-RELATED
Paelopatides60615ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60616REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60617-
Paelopatides60618GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides60619-
Paelopatides60620-
Paelopatides60621NUCLEAR PORE COMPLEX PROTEIN NUP155
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