About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60971CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60972ENOYL-COA HYDRATASE-RELATED
Paelopatides60973NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides6097426S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4
Paelopatides60976PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60977SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides60978EPM2A-INTERACTING PROTEIN 1
Paelopatides60979-
Paelopatides60980SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides60981-
Paelopatides60982TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
Paelopatides60983TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides60984POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides60985TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2
Paelopatides60986RABPHILIN, ISOFORM A
Paelopatides60987-
Paelopatides60988SERINE/THREONINE-PROTEIN KINASE LMTK1
Paelopatides60989REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60990PROTEIN CBG26694
Paelopatides60991-
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