About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60992-
Paelopatides60993RETROTRANSPOSON
Paelopatides60994-
Paelopatides60995-
Paelopatides60996-
Paelopatides60997SI:CH211-108C17.2-RELATED-RELATED
Paelopatides60998NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides60999-
Paelopatides61000ZGC:195170
Paelopatides61002BUCENTAUR RELATED
Paelopatides61003-
Paelopatides61004RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides61005-
Paelopatides61006PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides61007ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
Paelopatides61008ANKYRIN REPEAT FAMILY PROTEIN
Paelopatides61009TAZ PROTEIN TAFAZZIN
Paelopatides61010TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED
Paelopatides61011SPLICING FACTOR 45 SPF45
Paelopatides61012OPSIN
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