About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides61114ATP-BINDING CASSETTE SUB-FAMILY C
Paelopatides61115-
Paelopatides61116GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides61117ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides61118EPM2A-INTERACTING PROTEIN 1
Paelopatides61120ENDONUCLEASE-RELATED
Paelopatides61121DYNEIN HEAVY CHAIN
Paelopatides61122HISTIDINE-RICH GLYCOPROTEIN
Paelopatides61123-
Paelopatides61124HSPC111 PROTEIN-RELATED
Paelopatides61125-
Paelopatides61126ZINC FINGER PROTEIN
Paelopatides61127-
Paelopatides61128CALCIUM-SENSING RECEPTOR-RELATED
Paelopatides61129-
Paelopatides61130-
Paelopatides61131-
Paelopatides61132MAMMALIAN EPENDYMIN-RELATED PROTEIN 1
Paelopatides61133TRANSPOSABLE ELEMENT-RELATED
Paelopatides61134-
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