About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59589GLYCOSYL HYDROLASE-RELATED
Paelopatides59590BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 3
Paelopatides59591NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1
Paelopatides59592ENDONUCLEASE
Paelopatides59593-
Paelopatides59594FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59595APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
Paelopatides59596PROTEIN CBG26694
Paelopatides59597PROTEIN CBG26694
Paelopatides59598MATING RESPONSE PROTEIN POI2
Paelopatides59599MEVALONATE KINASE/GALACTOKINASE
Paelopatides59600-
Paelopatides5960160S RIBOSOMAL PROTEIN L24
Paelopatides59602NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides59603-
Paelopatides59604-
Paelopatides59605MYOSIN LIGHT CHAIN 1, 3
Paelopatides59606LEUCYL-TRNA SYNTHETASE
Paelopatides59607TRANSLATION INITIATION FACTOR IF-3
Paelopatides59608TRANSCRIPTIONAL REGULATOR
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