About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59568-
Paelopatides59569FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59570-
Paelopatides59571HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59572-
Paelopatides59573-
Paelopatides59574-
Paelopatides59575LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1
Paelopatides59577-
Paelopatides59578EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5
Paelopatides59579EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 5
Paelopatides59580-
Paelopatides59581-
Paelopatides59582-
Paelopatides59583-
Paelopatides59584SIGNAL PEPTIDE PEPTIDASE
Paelopatides59585-
Paelopatides59586PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides59587-
Paelopatides59588NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B
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