About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59504-
Paelopatides59505-
Paelopatides59506PUTATIVE-RELATED
Paelopatides59508F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59509BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides59510COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Paelopatides59513REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59514PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59515RETROTRANSPOSON
Paelopatides59516RETROTRANSPOSON
Paelopatides59517ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59518-
Paelopatides59519EXPRESSED PROTEIN
Paelopatides59520TUBULIN
Paelopatides59521TUBULIN
Paelopatides5952240S RIBOSOMAL PROTEIN S11 FAMILY MEMBER
Paelopatides59523MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21
Paelopatides59524REVERSE TRANSCRIPTASES
Paelopatides59525HEAVYWEIGHT, ISOFORM A
Paelopatides59526PHD-TYPE DOMAIN-CONTAINING PROTEIN
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