About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59424DNAJ-LIKE-2, ISOFORM A-RELATED
Paelopatides59425REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59426AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT
Paelopatides59427GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
Paelopatides59428-
Paelopatides59429-
Paelopatides59430-
Paelopatides59431PARANEOPLASTIC ANTIGEN
Paelopatides59432PROTEIN CBG26694
Paelopatides59433ENZYMATIC POLYPROTEIN-RELATED
Paelopatides59434ENDONUCLEASE-RELATED
Paelopatides59435DED DOMAIN-CONTAINING PROTEIN
Paelopatides59436BONUS, ISOFORM C-RELATED
Paelopatides59437CO-CHAPERONE PROTEIN DJLA
Paelopatides59438L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides59439-
Paelopatides59440MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22
Paelopatides59441-
Paelopatides59442ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides59443REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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