About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59356UNCHARACTERIZED
Paelopatides59357-
Paelopatides59358ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59359-
Paelopatides59360-
Paelopatides59361-
Paelopatides59362U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG
Paelopatides59363CTF8, CHROMOSOME TRANSMISSION FIDELITY FACTOR 8 HOMOLOG (S. CEREVISIAE)
Paelopatides59369ENDONUCLEASE-RELATED
Paelopatides59370ENDONUCLEASE-RELATED
Paelopatides59371CELL DIVISION CYCLE 16,23,27
Paelopatides59372PROTEIN CBG26694
Paelopatides59373REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59374ADHESION G PROTEIN-COUPLED RECEPTOR G7
Paelopatides59375BUCENTAUR RELATED
Paelopatides59376REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59377CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7
Paelopatides59378-
Paelopatides59379HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
Paelopatides59380BIFUNCTIONAL TH2 PROTEIN
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