About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59293CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides59294CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides59295CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides59296ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59297-
Paelopatides59298FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59299PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
Paelopatides59301ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59302ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59303SCP160
Paelopatides59304DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides59306PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides59307-
Paelopatides59308REVERSE TRANSCRIPTASES
Paelopatides59309PROTEIN CBG26694
Paelopatides59310PROTEIN CBG26694
Paelopatides59311GLUTAMATE DECARBOXYLASE-RELATED
Paelopatides59312GLUTAMATE DECARBOXYLASE-RELATED
Paelopatides59313DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
Paelopatides59314DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
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