About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59192NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 5
Paelopatides59193ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides59194SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides59195IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS
Paelopatides59196-
Paelopatides59197-
Paelopatides59198-
Paelopatides59199-
Paelopatides59200-
Paelopatides59201-
Paelopatides59202VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37
Paelopatides59203-
Paelopatides59204VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37
Paelopatides59205DNAJ HOMOLOG SUBFAMILY C MEMBER 30, MITOCHONDRIAL
Paelopatides59206TRANSPOSASE, PUTATIVE-RELATED
Paelopatides59207-
Paelopatides59208BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides59209PROTEIN CBG26694
Paelopatides59210-
Paelopatides59211KICSTOR COMPLEX PROTEIN C12ORF66
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