About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59090PROTEIN CBG26694
Paelopatides59091-
Paelopatides59092-
Paelopatides59093XAA-PRO AMINOPEPTIDASE 1
Paelopatides59094DEP DOMAIN CONTAINING PROTEIN 5
Paelopatides59095DNA-DIRECTED RNA POLYMERASE I,II,III
Paelopatides59096DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Paelopatides59097ENZYMATIC POLYPROTEIN-RELATED
Paelopatides59098-
Paelopatides59099-
Paelopatides59100-
Paelopatides59101ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59102-
Paelopatides59103SARCOSINE DEHYDROGENASE-RELATED
Paelopatides59104RETROTRANSPOSON
Paelopatides59105PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59106PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59107PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59108NETRIN RECEPTOR UNC5
Paelopatides59109REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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