About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59008-
Paelopatides59009DNA2/NAM7 HELICASE FAMILY MEMBER
Paelopatides59010-
Paelopatides59011BONUS, ISOFORM C-RELATED
Paelopatides59012ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides59013ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
Paelopatides59014PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides59015DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides59016DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
Paelopatides59017-
Paelopatides59018-
Paelopatides59019-
Paelopatides59020HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides59021CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS
Paelopatides59022-
Paelopatides59023-
Paelopatides59025ARGININE-TRNA-PROTEIN TRANSFERASE 1
Paelopatides59026REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59027PROTEIN CBG26694
Paelopatides59028RUNT RELATED
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